I will explain better and just one correction, I said Wii Motion, but the correct one is: Wii Remote emulated.
What happens is the following, I will explain better now, the file saved inside the "PROFILE" directory is only read and loaded outside the Dolphin Gui, when the Dolphin is executed from outside it can read the PROFILE and play the game correctly.
Pic1: Emulate the Wii's Bluetooth Adapter, This option that is responsible for the PROFILE file saves, if the Dolphin gui ignores the Joystick does not work!
Pic2: Settings saved in PROFILE of Wii Remote emulated!
Pic3: General process of current operation in Batocera!
Ps. Now I hope to be clear the great problem of Dolphin in Batocera!