jdorigao My friend, I know that the Core of the Atari800 can be adjusted and selected in the retroarch options menu, the correct one that should exist is the solution that exists in Bluemsx and Colecovision, unfortunately in this way now that the Atari800 is awful, change Bios whenever you change the system, how bad that!
Ps.: Operating this way, I do not know why they did the separation, because the truth that the separation was only from the directories because the execution system continues the same the 2 systems in 1 only!